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Research Christmas 2012: Research

Using a dog’s superior olfactory sensitivity to identify Clostridium difficile in stools and patients: proof of principle study

BMJ 2012; 345 doi: (Published 13 December 2012) Cite this as: BMJ 2012;345:e7396
  1. Marije K Bomers, consultant1,
  2. Michiel A van Agtmael, consultant1,
  3. Hotsche Luik, canine trainer and psychologist2,
  4. Merk C van Veen, resident3,
  5. Christina M J E Vandenbroucke-Grauls, professor4,
  6. Yvo M Smulders, professor1
  1. 1Department of Internal Medicine, VU University Medical Centre, PO Box 7057, 1007 MB Amsterdam, Netherlands
  2. 2Scent Detection Academy and Research, Animal Behaviour and Cognition, HL&HONDEN, Edam, Netherlands
  3. 3Department of Internal Medicine, St Lucas Andreas Hospital, Amsterdam, Netherlands
  4. 4Department of Medical Microbiology and Infection Control, VU University Medical Centre
  1. Correspondence to: M K Bomers m.bomers{at}
  • Accepted 24 September 2012


Objective To investigate whether a dog’s superior olfactory sensitivity can be used to detect Clostridium difficile in stool samples and hospital patients.

Design Proof of principle study, using a case-control design.

Setting Two large Dutch teaching hospitals.

Participants A 2 year old beagle trained to identify the smell of C difficile and tested on 300 patients (30 with C difficile infection and 270 controls).

Intervention The dog was guided along the wards by its trainer, who was blinded to the participants’ infection status. Each detection round concerned 10 patients (one case and nine controls). The dog was trained to sit or lie down when C difficile was detected.

Main outcome measures Sensitivity and specificity for detection of C difficile in stool samples and in patients.

Results The dog’s sensitivity and specificity for identifying C difficile in stool samples were both 100% (95% confidence interval 91% to 100%). During the detection rounds, the dog correctly identified 25 of the 30 cases (sensitivity 83%, 65% to 94%) and 265 of the 270 controls (specificity 98%, 95% to 99%).

Conclusion A trained dog was able to detect C difficile with high estimated sensitivity and specificity, both in stool samples and in hospital patients infected with C difficile.


Clostridium difficile infection is common, particularly in people in healthcare facilities who have received antimicrobials. C difficile causes toxin mediated intestinal disease, with symptoms ranging from mild diarrhoea to severe pseudomembranous colitis and toxic megacolon. The bacterium can be transmitted through either personal contact or the environment.1 Since 2000 more frequent and severe disease has emerged and large outbreaks in hospitals have necessitated ward closures and extensive infection control measures.2 3 4 Infection rates seem to be higher in North America than in Europe.3 5 In the Netherlands the incidence of nosocomial C difficile infection is comparable to that of other European countries (mean incidence 17.5-23/10 000 admissions)6 7; the mean incidence in the United Kingdom is 50/10 000 admissions.6

Cliff has been trained to sniff out the bacteria clostridium difficile

Early and rapid identification of C difficile infection is important for the initiation of infection control measures and treatment to prevent transmission.8 Several combinations of tests are used to diagnose cases. The traditional standard is by cytotoxin assay, which if C difficile toxins are present shows cytotoxicity of faecal eluate on mammalian cells. This technique requires cell cultures, however, and results take at least 1-2 days.9 10 Culture on selective media is very sensitive but also time consuming and it lacks specificity because of possible carriage of non-toxigenic isolates. Cultured strains can subsequently be tested for the production of toxins, in which case this is referred to as a toxigenic culture.4 10 Easy and rapid enzyme immunoassays to detect C difficile toxins or antigens are often used, despite their limited sensitivity or specificity.10 11 More recently, several nucleic acid amplification tests have been developed that have a high diagnostic accuracy and short turnaround time, although these tests are expensive and require specialised equipment and expertise.4 10 11 12

In daily practice, several factors delay the identification of C difficile infections. These include doctor’s delay (for example, the doctor does not consider the possibility of a C difficile infection, or decides to wait and see if the symptoms pass), inefficient sampling, and time required to process samples in the laboratory.13 14 As a result the mean time from onset of symptoms to start of treatment in studies ranges from 2.8 to 7.7 days.13 14 This can result in spread of C difficile infection by delaying appropriate infection control measures such as transferring patients to a single room. Screening all hospital patients at regular intervals could theoretically prevent delays in diagnosis but this is costly and impractical.

In the 1970s C difficile was identified as the cause of pseudomembranous colitis.15 16 Since then, C difficile associated diarrhoea has often been described as having a characteristic smell.17 Sensitivity and specificity of the odiferous detection of C difficile by nursing staff are 55-82% and 77-83%, respectively.18 19 Dogs have a far superior sense of smell, however, which is thought to exceed that of humans by a factor of 100.20 We hypothesised that it may be possible for a dog to be trained to recognise the presence of C difficile in stool samples, or even in patients. If so, this could prove a valuable screening tool for C difficile infections in healthcare facilities.


The training process

The dog used in this study was a 2 year old male beagle (fig 1). A professional detection dog instructor (HL) trained the dog to identify C difficile in stool samples and, if this proved possible, in patients. A reward based training method was used in which the correct behaviour was reinforced, for instance by providing a treat. The dog was taught to sit or lie down if a specific scent was detected. He had not received previous training in detection.


Fig 1 Detection dog on hospital ward

Training began by introducing the dog to the specific odour of toxigenic C difficile strains on culture plates. Wooden sticks were placed over the sample to absorb the scent emanating from the culture plates (often described as resembling horse manure9). Initially we left the sticks in this position overnight, but eventually the exposure time was shortened to around five minutes to reduce the strength of the scent. Early recognition of the scent was achieved by using simple search and find games, which were gradually replaced by exercises of increasing difficulty, for instance by using sticks with a fainter smell (that had not been exposed to the scent as long). Also, the scent was presented to the dog on materials other than the sticks, such as paper, fabric, and metal, and in different environments such as a kitchen, forest, or petrol station to vary background odours.

The next step of training concerned discrimination between stool samples that were positive for toxin producing C difficile strains from those that were negative. Again, rather than the dog having direct contact with the stool sample, we presented the scent in various forms (absorbed on a wooden stick or on fabric, sample contained in a plastic vial, etc).

After two months’ training we formally tested the diagnostic accuracy of the dog on stool samples. Finally, we explored the dog’s abilities to detect C difficile infection in patients admitted to hospital.

Samples and participants

C difficile on culture plates

For training purposes we used clinical isolates of toxigenic C difficile strains, cultured on standard media under anaerobic conditions.

Stool samples

We used stool samples that were sent to the microbiology laboratory to test for C difficile and other infectious causes of diarrhoea. Samples were considered positive for C difficile if toxin was detected by enzyme immunoassay (VIDAS Clostridium difficile A & B; BioMérieux, France) and culture revealed a toxigenic strain of C difficile. Negative stool samples were those that gave negative results in both tests. We excluded samples with inconsistent results (for example, negative result for toxin by enzyme immunoassay but positive culture result, or an undetermined toxin enzyme immunoassay value).

Selection of participants

We further explored the dog’s ability to detect C difficile infection on the wards of two hospitals in Amsterdam: VU University medical centre (a tertiary clinical care centre) and St Lucas Andreas Hospital (a large community hospital).

Between September 2010 and May 2011, we screened for inclusion consecutive patients who had a positive result for toxin by enzyme immunoassay in their stool sample. We aimed to include 30 patients in total. Both hospitals use an enzyme immunoassay plus a toxigenic culture to diagnose C difficile infection; however, the community hospital uses an enzyme immunoassay by a different manufacturer (ImmunoCard Toxins A&B; Meridian Bioscience, Cincinnati, OH).

Eligible cases had symptoms of diarrhoea and both a positive result for toxin by enzyme immunoassay and a toxigenic C difficile strain detected by culture (in a sample taken less than seven days before the detection round). We defined diarrhoea as three or more loose or watery stool passages a day. We excluded children and adults on intensive care units or haematology wards. Patients with a first relapse after completing treatment for a previous C difficile infection were eligible but not those with subsequent relapses. Because the availability of the dog and trainer could not be guaranteed every weekend we excluded patients with positive test results during the weekend.

For each case we approached nine control patients. These patients were on the same ward as and in close proximity to the index patient. Control patients did not have diarrhoea, or had diarrhoea but a negative result for C difficile toxin by enzyme immunoassay and culture (in a sample taken less than seven days previously). All participants (n=300; 30 cases plus 270 controls) gave informed consent.

Canine testing experiment

Diagnostic accuracy for detecting C difficile in stool samples

We formally tested the dog’s diagnostic accuracy on 50 stool samples with known positivity for C difficile and 50 with known negativity after completion of a two month practice period. To avoid the possibility that the dog simply recognised the odour of the sample rather than the odour being associated with the presence of C difficile, we did not use the samples that had been used during training. The scent of each sample was again absorbed onto different materials, which were then repeatedly (10 times) presented to the dog in different environments and at different concentrations. We considered a result to be positive (or negative) when it consistently provoked the same positive (or negative) response. If a sample provoked a mixed response (≤8/10 consistency: for example, eight positive responses and two negative ones), we classified it as an inconclusive result.

Diagnostic accuracy for detecting C difficile in patients

Next we evaluated the dog’s detection abilities in patients on the wards of the two hospitals. We prospectively included 30 consecutive patients with C difficile infection and 270 control patients. For each case and corresponding nine controls on the ward we organised a detection round as soon as possible, preferably before starting treatment or within 36 hours. During this round the dog, trainer, and a member of the research team simply walked past the beds of the 10 participants. The trainer classified the dog’s response as either positive (dog sat down), inconclusive (dog showed excitement, took extra time without actually sitting down), or negative (dog showed no particular interest). We assumed the dog would be able to identify the patient with a C difficile infection by smelling the air surrounding the patient (independent of a patient’s bowel movements or personal hygiene), so physical contact was unnecessary and avoided. If there was any doubt, the round was repeated once. The trainer was not aware of which patients had C difficile infection.

Statistical analyses

In the primary analyses, we interpreted inconclusive responses as negative ones. Secondary analysis was done with these responses interpreted as positive. We calculated 95% confidence intervals using an approximation (according to the efficient score method, corrected for continuity).21

Safety precautions

We consulted the hospital’s infection control committee to discuss the potential hazards of allowing a dog in the hospital. In accordance with recent guidelines, special attention was given to hand hygiene, making sure that staff and patients washed their hands both before and after contact with the dog.22 During detection rounds, the dog had no physical contact with patients, and contact with the environment (for example, bed, chair) was avoided as much as possible. The dog was not allowed in food preparation areas or on neonatal, haematology, or intensive care wards.

The dog receives a health evaluation by a licensed veterinarian four times a year. He is not fed raw meat. He is trained solely for the purpose of recognising C difficile. When at work, he neither barks nor shows aggression, is easily recognised by his outfit (fig 1), and is always on a leash.


Diagnostic accuracy for detecting C difficile in stool samples

The dog was presented with a total of 100 stool samples: 50 were positive for C difficile and 50 were negative. The dog gave a positive response to all 50 positive samples and a negative response to 47 of the 50 negative samples, with the remaining three negative samples recorded as an inconclusive response. In the primary analysis (interpreting inconclusive responses as negative responses), sensitivity and specificity were both 100% (95% confidence interval 91% to 100%). If an inconclusive response was considered as a positive result (secondary analysis), the dog’s sensitivity and specificity were 100% (91% to 100%) and 94% (83% to 98%), respectively.

Patients’ characteristics

The supplementary video illustrates how the detection rounds were carried out. One round took place on a paediatric ward but the children became excitable by having an animal on the ward and distracted the dog. For this reason the round was not included and paediatric wards were excluded from the study.

Thirty patients with C difficile infection and 270 control patients were included in the study. Table 1 shows the characteristics of those patients. On the day of the detection round all 30 cases had diarrhoea compared with 16 (6%) of the controls. Stool samples from 35 controls (13%) were tested for C difficile on clinical grounds (presence of diarrhoea) in the week leading up to the detection round; these all gave negative results, although a non-toxigenic C difficile strain was cultured from two controls. All but three cases formally met the definition for C difficile infection. The first patient had symptoms of the infection and a positive result for toxin by enzyme immunoassay, but a culture was mistakenly not done. The second patient had symptoms and a positive result for toxin by enzyme immunoassay but an initial negative culture result, which turned out to be positive when repeated. The third patient had a relapse with recurring symptoms and a positive toxigenic culture result but negative result for toxin by enzyme immunoassay.

Table 1

Characteristics of patients with Clostridium difficile infection and controls. Values are numbers (percentages) unless stated otherwise

View this table:

Diagnostic accuracy for detecting C difficile in patients

Figure 2 illustrates the diagnostic accuracy of the dog. An inconclusive response was recorded in seven participants: three cases and four controls. In the primary analysis (interpreting inconclusive responses as negative results), the dog correctly identified 25/30 cases (sensitivity 83%, 95% confidence interval 65% to 94 %) and 265/270 controls (specificity 98%, 95% to 99%). If inconclusive responses were considered as positive results (secondary analysis), the dog correctly identified 28 cases (sensitivity 93%, 76% to 99%) and 261 controls (specificity 97%, 94% to 98%).


Fig 2 Diagnostic accuracy of dog for detecting Clostridium difficile infection (CDI)

Table 2 provides information on the occasions that the dog and the laboratory gave discrepant results (inconclusive dog responses, false positives, and false negatives). In some instances the dog was clearly distracted by unrelated stimuli (for instance, by being offered a treat). Other cases were less clear and it cannot be ruled out that the dog responded to diarrhoea that was not caused by C difficile (for example, control 7, table 2) or asymptomatic carriage of a non-toxigenic strain (for example, control 8, table 2). Of all 16 participants with diarrhoea not related to C difficile infection, the dog gave a negative response in 13 controls and an inconclusive response in three controls.

Table 2

Participants with a discrepancy between laboratory results and dog response

View this table:


It is feasible to use a dog to detect Clostridium difficile in stool samples and in patients. The dog’s diagnostic accuracy with stool samples suggests that immediate identification of C difficile is possible. Moreover, our data suggest that the same may be true for the rapid diagnosis of C difficile infection on clinical wards. For the purposes of detection the dog did not need a stool sample or physical contact with patients. It would seem dogs can detect C difficile in the air surrounding patients. In addition, dogs are quick and efficient: patients in a hospital ward can be screened for the presence of C difficile infection in less than 10 minutes.

This is the first report of animal assisted detection of C difficile. There have been several studies and anecdotal reports on olfactory detection in medicine, mostly using dogs—for example, to detect malignancies of bladder, lung, breast, skin, prostate, ovary, and colon.23 24 25 26 27 28 29 In nearly all the studies, however, the animals were exposed to biological samples obtained from patients and not to the patients themselves.

Limitations of the study

Our study has several limitations. The small number of patients with C difficile infection limits the precision with which we can establish the dog’s sensitivity and specificity. The design of the study consistently included one case per round of 10 patients. Anticipation of a single positive result could have influenced the trainer’s behaviour, thereby unintentionally influencing the dog’s response.30 Furthermore, two thirds of the cases had been moved to a single room (to control transmission) when the dog arrived, and occupancy of a single room might again have influenced the trainer and therefore the dog’s response.30

In this study, culture was not routinely carried out on controls to screen for asymptomatic carriage of toxigenic and non-toxigenic C difficile. This is a limitation as consequently we do not know the percentage of asymptomatic C difficile carriers in our population and how the dog responded to them. Asymptomatic carriage of both toxigenic and non-toxigenic strains occurs in up to 18-30% of patients in hospital.31 32 33 34 This argues against a positive response by the dog. As the clinical relevance of detecting C difficile infection rather than carriage is far greater (both for the patient and for the prevention of transmission1 31), this was the focus of our study.

Another concern is that the results are not easily generalisable because we used only one dog and one trainer. It could be that the findings would be less convincing for another dog or trainer. Although unlikely, we cannot rule out the possibility that our first and only experience was with an exceptional dog-trainer combination. Should more dogs become available in the future for detection of C difficile infection, trained animals would need an individual assessment of performance and regular practice to maintain their skills. A second limitation of using an animal as a diagnostic tool is that, as with humans, behaviour is not fully predictable. The dog’s reaction to other stimuli (for example, children’s play, being beckoned, being offered a treat) illustrates that, despite a high level of training, dogs are still prone to distraction.

Another limitation is that we trained the dog in the hospital setting. Outside the research protocol we visited a few patients with C difficile infection on long term care facility wards. These cases spent much of the day in a shared living room and not in their beds. This proved more difficult for the dog. We hypothesise that in the hospital setting the bed is a strong source of smell because the patients are often bedridden and the mattress is more likely absorb odours. Patients in the community setting are often less confined to their room and bed. This could make odours more diffuse and more difficult to pinpoint. Also, the dog may have been conditioned to respond to the bacterium when a patient was in a hospital room (usually in bed). This may mean that detection dogs are less suitable for other settings such as nursing homes, at least without additional training.

The use of dogs in hospitals might pose a risk to the dogs themselves, hospital staff, and patients. Dogs can be carriers of C difficile strains and other pathogens. Similar to hospital staff, the dog could be a source of transmission. This risk could be minimised by using strict preventive measures such as avoiding physical contact with patients and their surroundings.

Unanswered questions

Unanswered questions remain, such as what does the dog actually smell—is it a certain quantity of bacteria, toxins, or other bacterial products? How does the dog respond to stool samples that are negative for toxin by enzyme immunoassay but positive by toxigenic culture, cytotoxicity assay, or nucleic acid amplification tests? And how does the dog respond to patients early in the course of the infection, or those with asymptomatic carriage of toxigenic and non-toxigenic strains? Does a positive response by the dog to a patient without symptoms predict disease? Can a persistent positive response by the dog after symptoms have cleared predict relapse, as suggested by the response to one participant (control 12, table 2)? Will the dog perform equally well in a high incidence setting—that is, during an outbreak, when several patients in one room could be affected? We intend to deal with these situations in future studies.

How could a dog that detects C difficile infection be used in daily practice? With regular surveillance rounds (for instance to screen all wards in a hospital with a high incidence of infection several times a week, a “pet scan”) C difficile might be detected earlier. Early detection could overcome common diagnostic delays (lack of clinical suspicion, delays in sampling stool, and laboratory procedures) and lead to prompt hygienic measures and treatment. However, further studies will clearly have to examine whether surveillance can actually limit transmission and reduce the incidence of infection. For example, surveillance is principally different from the type of case directed diagnosis in this study design, because the dog cannot immediately receive a reward after a positive identification, potentially extinguishing the trained alert.

In conclusion, in this proof of principle study a trained dog was able to detect C difficile with high estimated sensitivity and specificity, both in stool samples and in infected patients in a hospital setting. This finding could have great potential for screening for C difficile infection in healthcare facilities and thus contribute to the control and prevention of outbreaks.

What is already known on this topic

  • Early and rapid identification of Clostridium difficile infection (CDI) is important to prevent transmission by initiating adequate isolation measures and treatment

  • Studies have, however, shown that the mean time between the onset of symptoms and treatment is about 3-8 days

  • Despite the availability of a wide range of diagnostic tests, CDI is still a widespread healthcare related infection

What this study adds

  • A dog can be trained to identify C difficile with high estimated sensitivity and specificity, both in stool samples and in hospital patients with CDI

  • The potential of using a dog for detection is the ability to screen hospital wards for infected patients

  • Such screening could overcome common delays in diagnosis and thus help to control and prevent CDI outbreaks


Cite this as: BMJ 2012;345:e7396


  • Contributors: MKB, MvA, CvdB-G, and YMS developed the concept and outlined the methods. HL trained the dog. MKB, HL, and MvV carried out the detection rounds and collected the data. MKB analysed the data and drafted the paper. MvA, CvdB-G, and YMS provided conceptual and technical guidance. All authors critically appraised the paper, revised where appropriate and approved the final version of the manuscript. MKB and YMS are the guarantors.

  • Competing interests: All authors have completed the ICMJE uniform disclosure form at (available on request from the corresponding author) and declare: HL is the owner and chairman of the Animal Behaviour and Cognition, Scent Detection Research and Academy HL&HONDEN, Edam, Netherlands; otherwise no support from any organisation for the submitted work; no financial relationships with any organisations that might have an interest in the submitted work in the previous three years; no other relationships or activities that could appear to have influenced the submitted work.

  • Ethical approval: The research protocol was approved by the institutional review boards of both hospitals.

  • Data sharing: No additional data available.

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